Todd R. Klaenhammer Distinguished Scholar in Probiotics Research
Hometown: Paris, France
Past Education: BS Biological Sciences, Rene Descartes University, Paris, France; MS Biological Engineering, University of Technology in Compiegne, France; MS Food Science, NC State University; PhD Functional Genomics, NC State University; MBA, Executive Business Administration, University of Wisconsin-Madison
Rodolphe has worked on beneficial microbes, focusing on the occurrence and diversity of lactic acid bacteria in fermented foods and as probiotics. Using functional genomics, he has focused on uncovering the genetic basis for health-promoting traits, including the ability to uptake and catabolize non-digestible carbohydrates. He spent 9 years at Danisco-DuPont, characterizing probiotics and starter cultures, and established the functional role of CRISPR-Cas, as adaptive immune systems in bacteria. He has focused on establishing the molecular basis for their mechanism of action, as well as developing and applying CRISPR-based technologies for genotyping, building immunity and genome editing.
Hometown: Bronx, NY
Past Education: BS Biology, City College of NY; MS Microbiology University of Tennessee
Rosemary's background includes teaching biology, microbiology, microbial physiology, with experience in clinical microbiology; research on Pseudomonas physiology, vegetable fermentation microbiology, dairy bacteriophages, protein biochemistry and cell culture. Her current research includes: isolation, identification and characterization of probiotic strains. She screens for beneficial probiotic properties which involves metabolite and antimicrobial bacteriocin assays, studying microbe interaction with mammalian cell culture enterocytes, testing for immunomodulation potential and identifying phenotypes and genotypes for persistence in the gastrointestinal tract, as well as characterizing native CRISPR systems in lactobacilli.
Yong Jun Goh
Hometown: Kuala Lumpur, Malaysia
Past Education: BS Food Science & Technology, University of Nebraska-Lincoln; PhD Food Science & Technology, University of Nebraska-Lincoln
Jun is a Senior Scientist in the group and provides leadership to the functional genomics program, with core responsibilities in study design, the development of murine study platform, genetic tools and phenotypic assays, managing prebiotic research, and graduate student mentorship. Jun's research focuses on gene function discovery in probiotic microbes that contributes to their host fitness and immunomodulatory activities in the gut epithelium. Her interests include in vivo transcriptome studies of probiotic lactobacilli, the functions of S-layers and cell surface components on gut retention and immunomodulation, molecular mechanism of prebiotic oligosaccharides utilization by gut microbes, and she recently discovered the link between glycogen biosynthesis and in vivo gut competitiveness. With her previous experience in establishing a upp-based counterselective gene replacement system for L. acidophilus, Jun is presently working on developing a CRISPR-Cas9 based tool for programmable genome editing in lactobacilli.
Hometown: Wicklow, Ireland
Past Education: BA (Mod) Microbiology, Trinity College Dublin Ireland; PhD Microbiology National University of Ireland, University College Cork, Ireland
Sarah's graduate research concerned the study of bacteriophage and lysins as potential anti-microbial agents against Staphylococcus aureus. Sarah moved to the United States from Ireland after obtaining her Ph.D and joined the laboratory of Dr. Todd R. Klaenhammer as a postdoctoral research associate where she researched functional genomics of lactic acid bacteria and probiotic-host interactions. Currently as a senior research scientist, she continues research on functional genomics, probiotic-host interactions, developing the murine research platform, and is the lead scientist for the vaccine program which focuses on mucosal vaccine delivery systems using lactic acid bacteria. Her research also involves methods to improve on existing genetic systems and to identify new antigen and therapeutic targets. Sarah provides research assistance and supervision to staff, postdoctoral researchers and graduate and international visiting students across various research topics.
Natalia Cobián Fernández
Hometown: Gijón, Asturias, Spain
Past Education: BS Biology, University of Oviedo, Oviedo, Spain. MS Food Biotechnology, University of Oviedo, Oviedo, Spain.
Natalia is a Staff Scientist in the group and her background includes microbiology and molecular biology skills. She spent 7 years working in the industry developing new technologies for the detection of food and water microbiological contaminants in real time to prevent infectious outbreaks. Natalia is currently working in CRISPR and microbiology, leading the collaboration with our stakeholders to establish new methods to deliver CRISPR tools to enhance probiotic bacteria, and also characterizing probiotic and prebiotic properties. Natalia provides research supervision and mentoring to graduate and undergraduate students in different areas of expertise.
Claudio Hidalgo Cantabrana
Hometown: Oviedo, Spain
Past Education: BS Biology, University of Oviedo; MS Food Biotechnology, University of Oviedo: PhD Microbiology ,University of Oviedo
Claudio has worked on functional and genetic characterization of exopolysaccharide production by several bifidobacteria strains. During his PhD he studied the gene clusters involved in EPS production in Bifidobacterium animalis subsp. lactis, developing knockouts, studying the chemical composition of EPS and performing in vitro, ex vivo and in vivo assays to probe the immune modulation capability of bifidobacteria and EPS. Now a days, he is working at NCSU as a post-doctoral researcher in Barrangou’s lab focused on CRISPR and probiotics to develop new applications of CRISPR regarding probiotic genome enhancement, vaccine delivery and antimicrobials in new probiotics species of Lactobacillus and Bifidobacterium. Claudio provides research assistance to graduate students in probiotics and genetics areas.
Hometown: Greensboro, NC
Past Education: BS Computer Information Systems, Appalachian State University
Matthew completed a Bachelor's Degree in Computer Information Systems from Appalachian State University. He spent many years as a software engineer in the healthcare industy before deciding to apply his background to the field of genomics. Matt is currently using bioinformatics, functional genomics, and molecular biology to create solutions for genomic problems. His research interests include CRISPR-Cas systems, genome assembly, phage genomics, and infectious disease.
Meichen Pan (Echo)
Hometown: Qingdao, China
Past Education: BS Food Science, University of Wisconsin- Madison; MS Food Science, North Carolina State University
Echo conducted undergraduate research at University of Wisconsin - Madison on probiotic efficacy in human health. She recently joined the CRISPR lab in fall 2017 to study LAB related to vaginal health and CRISPR application on improving probiotic efficacy. She is interested in the food industry and had two internships with Sargento and J.M. Smucker. She is hoping to utilize her skills and knowledge to produce better probiotic products to benefit human health in the future.
Hometown: Durham, North Carolina
Past Education: BS Genetics, North Carolina State University
Avery completed a Bachelor’s in Genetics with a minor in Biotechnology at North Carolina State University. As an undergraduate, he conducted research on developing a transient CRISPR-Cas9 expression system for genome editing in cassava. He then transitioned to industry and worked as a scientist generating cell-based assays for compound toxicity testing. Avery joined the CRISPR Lab in March, 2019, and his research currently involves exploring CRISPR system functionality within Lactobacillus.
Hometown: Bamberg, Germany
Past Education: BS Microbiology, Auburn University
Anna completed her Bachelor's in Microbiology at Auburn University, where she researched biocontrol for animal pathogens. She then moved to industry to work for a start-up company, Boragen, where she screened novel boron chemistry for use in crop protection. Anna joined the CRISPR Lab in June, 2019.
Hometown: Ann Arbor, MI
Past Education: BS Food Science, Purdue University
MaryClaire completed her Bachelor's in Food Science with a minor in Fermentation Science at Purdue University. She researched the effects of sugars and sugar alcohols on the gelatinization temperature of various botanical starches. MaryClaire joined the CRISPR Lab in August, 2019.
Former Lab Members
|Name||Dates in Lab||Position in Lab||Employer||Position|
|Katheryne Daughtry||2014-2015||MS Food Science||Silesia Flavors||R&D Scientist|
|Brant Johnson||2012-2016||PhD Microbiology||Novozymes||Scientist|
|Kurt Selle||2013-2016||PhD Functional Genomics||Locus Biosciences, Inc||Scientist|
|Jeff Hymes||2014-2016||MS Food Science||Symberix||Associate Scientist II|
|Mia Theilmann||2015-2016||Visiting Student||University of Denmark||PhD Student|
|Emily Henriksen||2013-2016||Research Specialist|
|Emily Stout||2014-2016||MS Food Science||Glanbia||Cheese Scientist I|
|Cassandra Cañez||2016-2018||MS Functional Genomics||Merck Research Laboratories- Cambridge ESC||Scientist|
||2013-2018||MS Food Science
PhD Functional Genomics
||2017-2018||Undergraduate Assistant||FastMed Urgent Care||Clinical Assistant|
|Stefanie Andersen||2018-2019||PhD Bioinformatics|
|Allie Fulp||2018-2019||MS Food Science|
|Katelyn Brandt||2015-2019||PhD Functional Genomics||BASF|
|Courtney Klotz||2015-2019||PhD Functional Genomics||Sanofi Genzyme||Senior Manager Dupilumab Publications|
|Elice Kitchen-McKinley||2018-2019||BS Bioprocessing Sciences|